Sqlite cache needs updating

13 Jul

If Web Preferences were to be edited, then the cache of My Topic would have to be regenerated, because the setting it depends on might have been changed during the edit.For an average page there are a large number of these that have to be tracked.

Since version 1.1, Foswiki has built-in page caching.Annotation Hub/annotationhub.sqlite3’ reason: missing tables In addition: Warning message: download failed hub path: ‘https://annotationhub.bioconductor.org/metadata/annotationhub.sqlite3’ cache path: ‘/Users/mtang1/. ** package ‘slam’ successfully unpacked and MD5 sums checked ** libs clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -f PIC -Wall -mtune=core2 -g -O2 -c apply.c -o apply.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -f PIC -Wall -mtune=core2 -g -O2 -c grouped.c -o grouped.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -f PIC -Wall -mtune=core2 -g -O2 -c sparse.c -o sparse.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -f PIC -Wall -mtune=core2 -g -O2 -c util.c -o util.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o apply.o grouped.o sparse.o util.o -L/Library/Frameworks/R.framework/Resources/lib -l Rblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/..Annotation Hub/annotationhub.sqlite3’ reason: Couldn't resolve host name session Info() R version 3.3.1 (2016-06-21) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.11.5 (El Capitan) locale: [1] en_US. -framework R -Wl,-framework -Wl, Core Foundation ld: warning: directory not found for option '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [slam.so] Error 1 ERROR: compilation failed for package ‘slam’ * removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/slam’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/slam’ The downloaded source packages are in ‘/private/var/folders/79/x06wz9v560q10gw881n9c_z0x7m0vl/T/Rtmpxql Tc6/downloaded_packages’ Warning message: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘slam’ had non-zero exit status and then follow directions.By default, Foswiki pages are delivered to the browser using HTML, which is regenerated from the data stored in Foswiki each time the page is requested.Page caching is the process of storing (caching) this HTML on the server, as and when it is generated, so that the next time someone asks for the same page it can be delivered from the cache instead of having to be re-rendered from scratch.